PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000268133
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HB-other
Protein Properties Length: 938aa    MW: 104487 Da    PI: 9.5837
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000268133genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.14.6e-06207267755
                    --HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
       Homeobox   7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55 
                    f +++++e+e+  ++  n  ps+e     A+k            ++ +qV +WFqNrR+  
  MDP0000268133 207 FVQSEVTEMEAILQQynNTMPSREVLMAVADKFsesperkgkiTVQMKQVWNWFQNRRYAI 267
                    6677788888888866588999999999999999999999988999************865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577835.95E-8140No hitNo description
PfamPF051294.5E-8238IPR007808Transcription elongation factor 1
Gene3DG3DSA:1.10.10.602.4E-5206272IPR009057Homeodomain-like
SuperFamilySSF466897.7E-9206271IPR009057Homeodomain-like
PROSITE profilePS500719.41206270IPR001356Homeobox domain
PfamPF167191.5E-39323449IPR032001SAWADEE domain
Gene3DG3DSA:3.90.180.102.1E-35576754IPR011032GroES-like
CDDcd052897.67E-79577935No hitNo description
SuperFamilySSF501291.73E-26577631IPR011032GroES-like
SMARTSM008298.4E-11585935IPR020843Polyketide synthase, enoylreductase domain
SuperFamilySSF501291.73E-26662754IPR011032GroES-like
SuperFamilySSF517357.1E-28722912IPR016040NAD(P)-binding domain
Gene3DG3DSA:3.40.50.7203.5E-14755840IPR016040NAD(P)-binding domain
PfamPF136028.7E-19792935No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
GO:0016491Molecular Functionoxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 938 aa     Download sequence    Send to blast
MGKRKAKAKP AARKRTDKLD TVFCCPFCNH GSSVECRMLS VAFAKRISAQ PSQTCXCFDH  60
KVWIVMVYGQ KRTALGXLGI XRLEXLXRXS INLTLVESSV VLQRKESAGK YVPXFQLSTD  120
EPYLCVGCER SSFEPRRQII CEXKWLGIVC GLTLTLRIFR KPNSPVSVSK INTNLKFSLA  180
RLSSERRERE RAAMGRPPSN GGPTFRFVQS EVTEMEAILQ QYNNTMPSRE VLMAVADKFS  240
ESPERKGKIT VQMKQVWNWF QNRRYAIRAK SSKVLGKLDX SPMSRDDSAA ARNVPQGPQQ  300
IAAPVHVPSV PGSGKGASEN AIFEFEAKSG RDGAWYDVAN FLSHKNLETV NPEVLVRFAG  360
FGPEEDEWVN VRKHVRQRSL PCESSECVAV LPGDLILCFQ EGKEQALYFD AHVLDAQRRR  420
HDVRGCRCRF LVRYVHDQSE EIVPLRKVCR RPETDYRLQQ LHAVNEAISA EQKSMEQYMA  480
SATSGEMMQK QQNAVPPTFY VTASLPTQTT TPELRRSEIS TVVRSGNSSA XLSSSTLLGF  540
DLKATMRILR PRSFRASVSE SNHHLKVRFR RFVTSCRAVV LPRFGGPEVL ELRPVVQVPD  600
LKPHEVLVRA RAVSINPLDT RPRDDLSAXI XTHIEFFVFI FVXRLRLQMR SGYGRSIFGP  660
HLPLILGRDI SGDVAAVGDS VRGLSVGQEV FGALHPTAVR GTYADYAILS EEELAPKPTS  720
VTHVEASAIP FASLTAWRAL ISTARIAEGQ RLLVVGGGGA VGLAAIQISV ARGCXVTTTC  780
GKQSIDRVLA AGAEQAVDYT AEXIEFTIKG KFDAVLDTIG GPETERICIN LLKRGGHYMT  840
LQGDAASLAD SYGIAIGLPX ATAVLLKKQI QYRYSHXIEY WWTYMRADSE GLDEIRRLSE  900
AGKLNXPVEK TFPITQVIEA HEAKEKKQIH GKIVLELD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vn8_A5e-4757893724374RETICULON-4-INTERACTING PROTEIN 1
2vn8_B5e-4757893724374RETICULON-4-INTERACTING PROTEIN 1
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.1213e-67bud| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-124sequence-specific DNA binding transcription factors;sequence-specific DNA binding